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Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition
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@article{IJASEIT13457, author = {Sigit Dwi Maryanto and Roberdi Roberdi and Zulfikar Achmad Tanjung and Wulan Artutiningsih and Olivia Sriulina Purba and Tengku Imam Saputra and Condro Utomo and Tony Liwang}, title = {Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition}, journal = {International Journal on Advanced Science, Engineering and Information Technology}, volume = {11}, number = {5}, year = {2021}, pages = {2016--2022}, keywords = {Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.}, abstract = {Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.
}, issn = {2088-5334}, publisher = {INSIGHT - Indonesian Society for Knowledge and Human Development}, url = {http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457}, doi = {10.18517/ijaseit.11.5.13457} }
EndNote
%A Maryanto, Sigit Dwi %A Roberdi, Roberdi %A Tanjung, Zulfikar Achmad %A Artutiningsih, Wulan %A Purba, Olivia Sriulina %A Saputra, Tengku Imam %A Utomo, Condro %A Liwang, Tony %D 2021 %T Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition %B 2021 %9 Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing. %! Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition %K Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing. %XGlobal warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.
%U http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 %R doi:10.18517/ijaseit.11.5.13457 %J International Journal on Advanced Science, Engineering and Information Technology %V 11 %N 5 %@ 2088-5334
IEEE
Sigit Dwi Maryanto,Roberdi Roberdi,Zulfikar Achmad Tanjung,Wulan Artutiningsih,Olivia Sriulina Purba,Tengku Imam Saputra,Condro Utomo and Tony Liwang,"Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition," International Journal on Advanced Science, Engineering and Information Technology, vol. 11, no. 5, pp. 2016-2022, 2021. [Online]. Available: http://dx.doi.org/10.18517/ijaseit.11.5.13457.
RefMan/ProCite (RIS)
TY - JOUR AU - Maryanto, Sigit Dwi AU - Roberdi, Roberdi AU - Tanjung, Zulfikar Achmad AU - Artutiningsih, Wulan AU - Purba, Olivia Sriulina AU - Saputra, Tengku Imam AU - Utomo, Condro AU - Liwang, Tony PY - 2021 TI - Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition JF - International Journal on Advanced Science, Engineering and Information Technology; Vol. 11 (2021) No. 5 Y2 - 2021 SP - 2016 EP - 2022 SN - 2088-5334 PB - INSIGHT - Indonesian Society for Knowledge and Human Development KW - Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing. N2 -Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.
UR - http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 DO - 10.18517/ijaseit.11.5.13457
RefWorks
RT Journal Article ID 13457 A1 Maryanto, Sigit Dwi A1 Roberdi, Roberdi A1 Tanjung, Zulfikar Achmad A1 Artutiningsih, Wulan A1 Purba, Olivia Sriulina A1 Saputra, Tengku Imam A1 Utomo, Condro A1 Liwang, Tony T1 Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition JF International Journal on Advanced Science, Engineering and Information Technology VO 11 IS 5 YR 2021 SP 2016 OP 2022 SN 2088-5334 PB INSIGHT - Indonesian Society for Knowledge and Human Development K1 Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing. ABGlobal warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.
LK http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 DO - 10.18517/ijaseit.11.5.13457