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Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition

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@article{IJASEIT13457,
   author = {Sigit Dwi Maryanto and Roberdi Roberdi and Zulfikar Achmad Tanjung and Wulan Artutiningsih and Olivia Sriulina Purba and Tengku Imam Saputra and Condro Utomo and Tony Liwang},
   title = {Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition},
   journal = {International Journal on Advanced Science, Engineering and Information Technology},
   volume = {11},
   number = {5},
   year = {2021},
   pages = {2016--2022},
   keywords = {Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.},
   abstract = {

Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.

},    issn = {2088-5334},    publisher = {INSIGHT - Indonesian Society for Knowledge and Human Development},    url = {http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457},    doi = {10.18517/ijaseit.11.5.13457} }

EndNote

%A Maryanto, Sigit Dwi
%A Roberdi, Roberdi
%A Tanjung, Zulfikar Achmad
%A Artutiningsih, Wulan
%A Purba, Olivia Sriulina
%A Saputra, Tengku Imam
%A Utomo, Condro
%A Liwang, Tony
%D 2021
%T Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition
%B 2021
%9 Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.
%! Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition
%K Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.
%X 

Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.

%U http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 %R doi:10.18517/ijaseit.11.5.13457 %J International Journal on Advanced Science, Engineering and Information Technology %V 11 %N 5 %@ 2088-5334

IEEE

Sigit Dwi Maryanto,Roberdi Roberdi,Zulfikar Achmad Tanjung,Wulan Artutiningsih,Olivia Sriulina Purba,Tengku Imam Saputra,Condro Utomo and Tony Liwang,"Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition," International Journal on Advanced Science, Engineering and Information Technology, vol. 11, no. 5, pp. 2016-2022, 2021. [Online]. Available: http://dx.doi.org/10.18517/ijaseit.11.5.13457.

RefMan/ProCite (RIS)

TY  - JOUR
AU  - Maryanto, Sigit Dwi
AU  - Roberdi, Roberdi
AU  - Tanjung, Zulfikar Achmad
AU  - Artutiningsih, Wulan
AU  - Purba, Olivia Sriulina
AU  - Saputra, Tengku Imam
AU  - Utomo, Condro
AU  - Liwang, Tony
PY  - 2021
TI  - Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition
JF  - International Journal on Advanced Science, Engineering and Information Technology; Vol. 11 (2021) No. 5
Y2  - 2021
SP  - 2016
EP  - 2022
SN  - 2088-5334
PB  - INSIGHT - Indonesian Society for Knowledge and Human Development
KW  - Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.
N2  - 

Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.

UR - http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 DO - 10.18517/ijaseit.11.5.13457

RefWorks

RT Journal Article
ID 13457
A1 Maryanto, Sigit Dwi
A1 Roberdi, Roberdi
A1 Tanjung, Zulfikar Achmad
A1 Artutiningsih, Wulan
A1 Purba, Olivia Sriulina
A1 Saputra, Tengku Imam
A1 Utomo, Condro
A1 Liwang, Tony
T1 Transcriptome Profiling of Elaeis guineensis Jacq. Under Heat Stress Condition
JF International Journal on Advanced Science, Engineering and Information Technology
VO 11
IS 5
YR 2021
SP 2016
OP 2022
SN 2088-5334
PB INSIGHT - Indonesian Society for Knowledge and Human Development
K1 Differentially expressed genes; heat shock proteins; heat-temperature; oil palm; RNA-sequencing.
AB 

Global warming is predicted to have a generally negative effect on agriculture activity. High temperatures stress could affect plant growth negatively. Developing plants with improved thermal tolerance using molecular genetic approaches could mitigate these heat stress effects. Elite palms with better adaptation to heat can be selected from germplasm using molecular markers. Transcriptome profiling by RNA sequencing is a way to find molecular markers of a particular trait. The objective of the study was to obtain differential expressed genes (DEGs) related to the heat stress effect. RNA sequencing results were displayed using heat maps which were useful for visualizing the expression of genes across the high-temperature treatment and control samples. In total, where 1,087 genes were identified involved in oil palm heat stress. Sixty-four (64) of them were differentially expressed, consisted of seventeen (17) up-regulated and forty-seven (47) down-regulated. The uni-gene was summarized in Gene Ontology (GO) categories, namely: biological process, molecular function, and cellular component, subsequently divided into 53 sub-categories. The single organism process, biosynthetic process, response to stimulus, oxidation-reduction process, and response stress were the five primary sub-categories. Sixty-four genes related to heat stress were found, and eight (12.5%) of them were determined as heat shock protein (HSP) family. The highest transcription level was the uncharacterized gene, a member of the heat response sub-category, and the others up-regulated gene consisted of HSP family gene, Bcl-2-associated athanogene (BAG) family and HIPP gene, slr0575 gene, CML14 gene, and PARP gene.

LK http://ijaseit.insightsociety.org/index.php?option=com_content&view=article&id=9&Itemid=1&article_id=13457 DO - 10.18517/ijaseit.11.5.13457